JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MARVELD2_chr5_69410116_69449330	0/0	t0027	2758	1	0	1	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0028	2770	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0029	2761	1	0	1	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0030	2760	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0031	2759	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0032	2774	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0033	2769	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0034	2762	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0035	2772	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0036	2775	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0037	2763	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0038	2761	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0039	2748	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0040	2760	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0041	2770	1	0	1	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0042	2761	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0043	2760	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0044	2771	1	0	1	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0045	2769	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0046	2761	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0047	2771	1	0	1	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0048	2747	1	0	1	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0049	2748	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	t0050	2769	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD3_chr16_71621184_71641465	0/0	t0001	1709	269	41	50	140	8	30	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/1	t0002	1709	58	24	14	8	4	7	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	1/0	t0003	1709	39	24	9	3	2	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0004	1709	4	4	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0005	1709	3	0	0	0	0	3	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0006	1709	2	0	0	2	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0007	1709	2	0	0	2	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0008	1709	1	0	0	0	0	1	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0009	1709	1	0	0	0	0	1	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0010	1709	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0011	1709	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0012	1709	1	0	1	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0013	1709	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	t0014	1709	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MAS1L_chr6_29481697_29492956	0/1	t0001	124	337	66	70	151	12	37	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	t0002	124	86	30	6	47	0	3	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	t0003	124	6	0	0	6	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	t0004	124	1	0	0	1	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	t0005	124	1	0	0	1	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1_chr6_159885988_159922447	0/0	t0001	9911	50	7	10	30	2	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0002	9909	43	7	12	15	1	8	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0003	9909	19	7	1	10	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/1	t0004	9907	16	4	4	2	1	4	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0005	9909	14	0	1	11	1	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0006	9909	11	0	10	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0007	9907	11	6	4	1	0	0	copy fasta	MAS1	chr6	159885988	159922447