Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARF1_chr1_228077708_228104212	0/0	t0009	1295	1	0	0	0	0	1	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0010	1295	1	0	0	1	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0011	1295	1	0	0	1	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	t0012	1295	1	0	1	0	0	0	copy fasta	ARF1	chr1	228077708	228104212
ARF3_chr12_48930723_48962487	0/0	t0001	3498	138	19	25	65	10	19	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0002	3496	94	8	25	49	3	9	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0003	3496	28	12	4	1	1	10	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	1/0	t0004	3496	26	23	2	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0005	3496	11	10	1	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0006	3496	8	8	0	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0007	3496	7	0	0	7	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0008	3496	6	5	1	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0009	3497	4	1	3	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0010	3496	4	0	2	0	2	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0011	3496	3	0	0	3	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0012	3498	3	0	0	3	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0013	3496	2	0	2	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0014	3497	2	0	1	0	0	1	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0015	3498	2	0	0	2	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0016	3498	2	0	0	0	0	2	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0017	3506	1	0	1	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0018	3496	1	0	0	1	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0019	3496	1	1	0	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0020	3496	1	1	0	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0021	3498	1	0	1	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0022	3498	1	0	0	0	0	1	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/1	t0023	3498	1	0	0	0	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	t0024	3498	1	0	0	1	0	0	copy fasta	ARF3	chr12	48930723	48962487
ARF4_chr3_57566363_57602344	1/0	t0001	1054	282	39	49	146	11	36	copy fasta	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/1	t0002	1054	71	43	18	0	3	6	copy fasta	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	t0003	1054	2	1	1	0	0	0	copy fasta	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	t0004	1054	2	2	0	0	0	0	copy fasta	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	t0005	1054	1	1	0	0	0	0	copy fasta	ARF4	chr3	57566363	57602344
ARF5_chr7_127583411_127596700	1/1	t0001	490	376	96	74	151	14	39	copy fasta	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	t0002	490	21	0	1	20	0	0	copy fasta	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	t0003	490	2	2	0	0	0	0	copy fasta	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	t0004	490	1	0	0	0	0	1	copy fasta	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	t0005	490	1	0	0	1	0	0	copy fasta	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	t0006	490	1	0	1	0	0	0	copy fasta	ARF5	chr7	127583411	127596700
ARF6_chr14_49888082_49902054	0/1	t0001	3346	236	45	53	96	9	32	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0002	3347	20	5	0	15	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	1/0	t0003	3348	16	1	1	13	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0004	3348	12	12	0	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0005	3348	11	7	3	0	1	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0006	3346	8	7	1	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0007	3346	8	8	0	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0008	3346	4	0	3	0	1	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0009	3346	4	0	0	4	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0010	3348	3	1	1	0	0	1	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0011	3346	2	0	0	2	0	0	copy fasta	ARF6	chr14	49888082	49902054