JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAS1_chr6_159885988_159922447	0/0	t0008	9913	9	3	0	3	0	3	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0009	9905	7	0	3	0	2	2	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0010	9876	7	7	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0011	9911	6	0	0	2	1	3	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0012	9879	6	6	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0013	9913	5	2	2	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0014	9909	5	0	0	5	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0015	9878	5	0	3	0	1	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0016	9909	4	0	0	3	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0017	9911	4	0	1	3	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0018	9911	3	3	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0019	9908	3	1	1	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0020	9910	3	0	0	2	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0021	9915	3	0	0	2	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0022	9911	3	0	0	3	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0023	9911	3	0	0	3	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0024	9912	3	1	0	2	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0025	9909	3	0	0	3	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0026	9876	3	3	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0027	9877	3	3	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0028	9909	2	2	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0029	9909	2	0	2	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0030	9907	2	2	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0031	9904	2	0	2	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	1/0	t0032	9904	2	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0033	9913	2	0	0	2	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0034	9910	2	1	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0035	9910	2	0	0	2	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0036	9907	2	0	1	0	1	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0037	9895	2	2	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0038	9905	2	1	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0039	9879	2	2	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0040	9892	2	2	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0041	9876	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0042	9877	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0043	9911	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0044	9913	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0045	9913	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0046	9913	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0047	9910	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0048	9911	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0049	9911	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0050	9912	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0051	9911	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0052	9910	1	0	0	0	1	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0053	9909	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0054	9909	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0055	9909	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0056	9910	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0057	9909	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447