JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAS1_chr6_159885988_159922447	0/0	t0058	9910	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0059	9911	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0060	9906	1	0	0	0	1	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0061	9907	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0062	9906	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0063	9907	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0064	9907	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0065	9908	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0066	9907	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0067	9904	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0068	9906	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0069	9918	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0070	9916	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0071	9916	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0072	9913	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0073	9913	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0074	9912	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0075	9912	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0076	9914	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0077	9912	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0078	9911	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0079	9911	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0080	9911	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0081	9911	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0082	9911	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0083	9911	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0084	9911	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0085	9911	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0086	9908	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0087	9908	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0088	9909	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0089	9909	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0090	9909	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0091	9906	1	0	0	0	1	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0092	9907	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0093	9907	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0094	9907	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0095	9907	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0096	9907	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0097	9906	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0098	9905	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0099	9876	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0100	9876	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0101	9878	1	0	0	1	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0102	9878	1	0	1	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0103	9878	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0104	9878	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0105	9878	1	0	0	0	0	1	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0106	9879	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0107	9874	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447