JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAS1_chr6_159885988_159922447	0/0	t0108	9877	1	0	0	0	1	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0109	9911	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MAS1_chr6_159885988_159922447	0/0	t0110	9909	1	1	0	0	0	0	copy fasta	MAS1	chr6	159885988	159922447
MASP1_chr3_187212282_187296737	0/0	t0001	2897	97	3	10	69	2	13	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	1/0	t0002	2895	96	28	8	35	5	19	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0003	2895	66	2	23	28	5	8	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0004	2895	46	9	4	32	0	1	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0005	2895	23	20	0	2	0	1	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0006	2895	13	10	3	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0007	2895	13	9	2	0	1	1	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0008	2895	3	0	0	0	0	3	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0009	2895	2	0	0	2	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0010	2895	2	1	1	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0011	2895	2	1	0	0	0	1	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0012	2897	2	0	0	2	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0013	2895	2	1	1	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0014	2897	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0015	2897	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0016	2895	1	0	1	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/1	t0017	2895	1	0	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0018	2895	1	1	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0019	2895	1	1	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0020	2895	1	1	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0021	2895	1	1	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0022	2897	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0023	2897	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0024	2895	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0025	2897	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0026	2897	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0027	2895	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0028	2895	1	0	0	0	1	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0029	2895	1	0	0	0	0	1	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	t0030	2895	1	0	1	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187229082_187296737	0/0	t0001	1708	86	0	7	73	0	6	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0002	1708	70	26	5	29	4	6	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0003	1708	66	3	21	30	5	7	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0004	1708	50	10	5	30	0	5	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0005	1708	24	3	5	6	1	9	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0006	1708	20	1	2	4	2	11	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	1/0	t0007	1708	17	15	1	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/1	t0008	1708	16	8	2	0	2	3	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0009	1708	11	9	0	2	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0010	1708	6	4	2	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0011	1708	5	5	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0012	1708	5	0	0	5	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0013	1708	4	0	0	4	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0014	1708	3	1	1	0	0	1	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0015	1708	2	0	0	2	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0016	1708	2	0	0	2	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0017	1708	2	1	0	1	0	0	copy fasta	MASP1	chr3	187229082	187296737