JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MASP1_chr3_187229082_187296737	0/0	t0018	1708	1	0	0	1	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0019	1708	1	0	1	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0020	1708	1	0	1	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0021	1708	1	0	1	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0022	1708	1	0	1	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0023	1708	1	1	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0024	1708	1	0	1	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0025	1708	1	0	0	1	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0026	1708	1	1	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0027	1708	1	1	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	t0028	1708	1	1	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP2_chr1_11021523_11052239	0/1	t0001	395	232	35	52	104	6	34	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	1/0	t0002	395	107	57	14	26	0	9	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	t0003	395	3	3	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	t0004	395	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	t0005	395	1	0	0	0	0	1	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	t0006	395	1	0	0	1	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	t0007	395	1	0	0	1	0	0	copy fasta	MASP2	chr1	11021523	11052239
MAST1_chr19_12833515_12879952	1/1	t0001	141	312	84	62	124	10	30	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	t0002	141	4	4	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST2_chr1_45798612_46041122	0/1	t0001	341	284	81	60	101	11	30	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	1/0	t0002	341	2	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	t0003	341	1	0	0	1	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	t0004	341	1	0	0	0	1	0	copy fasta	MAST2	chr1	45798612	46041122
MAST3_chr19_18092778_18156687	0/0	t0001	1974	129	17	26	64	5	17	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0002	1975	55	14	14	21	4	2	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/1	t0003	1978	27	0	7	12	1	6	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0004	1978	27	22	4	0	0	1	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0005	1978	13	3	3	6	0	1	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0006	1977	10	9	1	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	1/0	t0007	1977	7	3	1	1	0	1	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0008	1973	6	2	0	4	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0009	1978	3	2	1	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0010	1978	3	3	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0011	1978	3	3	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0012	1979	2	0	1	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0013	1974	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0014	1974	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0015	1974	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0016	1979	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0017	1974	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0018	1975	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0019	1979	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0020	1976	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0021	1972	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0022	1978	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	t0023	1978	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST4_chr5_66591393_67174593	0/0	t0001	2804	15	10	3	1	0	1	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0002	2805	11	4	2	1	2	2	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0003	2805	9	4	3	0	0	2	copy fasta	MAST4	chr5	66591393	67174593