JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAST4_chr5_66591393_67174593	1/1	t0004	2806	8	3	3	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0005	2804	8	7	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0006	2805	7	4	0	2	0	1	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0007	2804	6	3	1	2	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0008	2806	5	3	0	1	0	1	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0009	2793	4	3	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0010	2807	4	4	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0011	2803	3	0	1	1	0	1	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0012	2806	3	2	0	0	0	1	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0013	2806	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0014	2803	2	1	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0015	2807	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0016	2797	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0017	2807	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0018	2807	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0019	2805	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0020	2803	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0021	2805	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0022	2806	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0023	2804	1	0	0	0	0	1	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0024	2797	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0025	2807	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0026	2805	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0027	2807	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0028	2806	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0029	2805	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0030	2793	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0031	2806	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	t0032	2797	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MASTL_chr10_27150352_27192953	0/1	t0001	1494	112	10	35	51	3	12	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0002	1493	66	3	7	51	1	4	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	1/0	t0003	1493	51	16	22	7	2	3	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0004	1494	37	4	0	29	0	4	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0005	1492	30	27	3	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0006	1493	28	2	0	24	2	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0007	1493	19	16	3	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0008	1494	18	0	0	18	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0009	1494	11	5	2	0	2	2	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0010	1495	4	0	0	4	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0011	1493	3	3	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0012	1495	2	0	1	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0013	1494	2	0	0	1	0	1	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0014	1492	2	0	1	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0015	1494	2	0	1	0	0	1	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0016	1494	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0017	1483	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0018	1494	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0019	1492	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0020	1495	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0021	1493	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953