JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MASTL_chr10_27150352_27192953	0/0	t0022	1494	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0023	1493	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0024	1494	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0025	1492	1	0	1	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	t0026	1493	1	0	0	0	0	1	copy fasta	MASTL	chr10	27150352	27192953
MAT1A_chr10_80266820_80294658	0/0	t0001	2203	105	10	18	57	6	14	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0002	2213	96	14	16	53	1	12	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	1/1	t0003	2197	37	1	18	7	4	5	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0004	2212	31	1	15	4	2	9	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0005	2213	13	11	1	0	0	1	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0006	2203	10	8	2	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0007	2213	9	3	3	0	0	3	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0008	2203	7	7	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0009	2203	7	6	1	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0010	2213	7	7	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0011	2203	5	0	0	5	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0012	2197	5	1	2	0	1	1	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0013	2203	4	0	2	0	1	1	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0014	2213	4	3	1	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0015	2203	4	1	0	2	0	1	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0016	2213	3	2	1	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0017	2207	2	2	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0018	2203	2	2	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0019	2207	2	2	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0020	2207	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0021	2197	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0022	2197	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0023	2213	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0024	2213	1	0	0	0	1	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0025	2213	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0026	2203	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0027	2203	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0028	2213	1	0	0	1	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0029	2203	1	0	0	1	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0030	2213	1	0	0	1	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0031	2203	1	0	0	1	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0032	2203	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0033	2212	1	0	0	0	0	1	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0034	2212	1	0	0	1	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0035	2213	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0036	2212	1	0	0	1	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0037	2212	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	t0038	2213	1	1	0	0	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT2A_chr2_85534168_85550281	1/1	t0001	1630	389	81	74	173	17	42	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0002	1630	8	8	0	0	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0003	1630	5	0	1	1	0	3	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0004	1630	5	0	0	5	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0005	1630	3	0	0	2	0	1	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0006	1630	2	0	0	0	0	2	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0007	1630	1	0	0	0	1	0	copy fasta	MAT2A	chr2	85534168	85550281