JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAT2A_chr2_85534168_85550281	0/0	t0008	1630	1	0	0	1	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0009	1630	1	0	0	1	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0010	1630	1	0	0	1	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0011	1630	1	1	0	0	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	t0012	1630	1	0	1	0	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2B_chr5_163500619_163524354	1/1	t0001	1060	279	74	59	107	10	27	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	t0002	1059	42	11	10	15	1	5	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	t0003	1055	40	2	6	17	3	12	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	t0004	1061	6	5	1	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	t0005	1060	1	1	0	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	t0006	1060	1	0	0	1	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	t0007	1060	1	1	0	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MATCAP1_chr16_67170599_67188963	0/0	t0001	1963	71	22	12	28	6	3	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/1	t0002	1961	56	21	11	16	1	6	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0003	1965	42	11	6	18	1	6	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0004	1959	33	7	8	12	2	4	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0005	1967	19	5	7	5	0	2	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0006	1957	19	4	3	11	1	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0007	1969	8	4	2	2	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0008	1955	8	2	1	4	1	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0009	1953	8	6	0	1	0	1	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	1/0	t0010	1971	6	1	0	4	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0011	1951	5	1	2	1	0	1	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0012	1947	4	2	0	0	0	2	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0013	1975	3	3	0	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0014	1949	3	1	0	0	0	2	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0015	1963	3	0	3	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0016	1963	2	2	0	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0017	1963	2	0	2	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0018	1967	1	0	0	1	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0019	1963	1	0	0	0	0	1	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0020	1957	1	1	0	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0021	1963	1	1	0	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0022	1961	1	1	0	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0023	1953	1	0	0	0	0	1	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0024	1965	1	1	0	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0025	1965	1	0	0	1	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0026	1963	1	0	0	0	0	1	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0027	1961	1	0	0	0	0	1	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0028	1945	1	0	0	1	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0029	1943	1	0	0	1	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0030	1939	1	0	0	0	0	1	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0031	1957	1	0	1	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0032	1963	1	0	0	1	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	t0033	1955	1	0	0	1	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP2_chr7_36319152_36372240	0/1	t0001	2909	286	59	43	148	10	25	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0002	2909	44	1	8	30	0	5	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	1/0	t0003	2909	13	11	1	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0004	2909	12	5	5	0	1	1	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0005	2909	9	1	3	2	1	2	copy fasta	MATCAP2	chr7	36319152	36372240