JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MATCAP2_chr7_36319152_36372240	0/0	t0006	2909	6	0	5	0	1	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0007	2909	5	5	0	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0008	2913	3	2	1	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0009	2909	2	1	1	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0010	2909	1	1	0	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0011	2909	1	1	0	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0012	2909	1	0	0	0	0	1	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0013	2909	1	0	1	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0014	2909	1	0	0	1	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0015	2909	1	0	0	1	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0016	2909	1	1	0	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	t0017	2909	1	0	0	0	1	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATK_chr19_3772973_3791381	0/1	t0001	575	326	73	64	136	13	39	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	1/0	t0002	575	73	11	11	43	1	6	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	t0003	576	17	2	2	10	0	3	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	t0004	575	12	11	1	0	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	t0005	575	2	0	0	2	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	t0006	576	2	0	0	2	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	t0007	575	1	1	0	0	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	t0008	575	1	0	0	1	0	0	copy fasta	MATK	chr19	3772973	3791381
MATN1_chr1_30706277_30728585	1/1	t0001	2340	122	7	20	57	9	27	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0002	2337	90	14	8	65	0	3	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0003	2340	73	11	22	34	0	6	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0004	2338	51	16	12	16	4	3	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0005	2337	26	18	4	0	1	3	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0006	2336	19	0	3	16	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0007	2337	7	6	1	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0008	2339	6	0	0	6	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0009	2334	6	6	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0010	2335	4	1	3	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0011	2340	4	2	2	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0012	2340	4	4	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0013	2337	2	2	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0014	2338	2	2	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0015	2337	1	0	0	1	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0016	2337	1	0	0	1	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0017	2337	1	0	1	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0018	2337	1	0	0	0	0	1	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0019	2337	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0020	2337	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0021	2338	1	0	0	0	0	1	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0022	2340	1	0	0	0	0	1	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0023	2340	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0024	2340	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0025	2334	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0026	2334	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0027	2336	1	0	0	1	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0028	2338	1	0	0	1	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0029	2338	1	0	0	1	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0030	2340	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585