JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MATN1_chr1_30706277_30728585	0/0	t0031	2340	1	0	0	0	0	1	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0032	2340	1	0	1	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0033	2340	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0034	2340	1	0	0	1	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0035	2340	1	0	0	0	0	1	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0036	2340	1	0	0	0	0	1	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0037	2340	1	0	1	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	t0038	2340	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN2_chr8_97864064_98041724	1/1	t0001	1263	150	23	31	70	11	13	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0002	1263	97	31	13	40	3	10	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0003	1263	22	2	7	5	2	6	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0004	1269	12	0	0	10	0	2	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0005	1253	8	8	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0006	1263	5	5	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0007	1269	5	3	0	2	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0008	1263	3	3	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0009	1263	3	0	0	3	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0010	1263	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0011	1263	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0012	1263	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0013	1263	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0014	1263	1	0	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0015	1263	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0016	1253	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0017	1263	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0018	1263	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	t0019	1269	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN3_chr2_19987052_20017668	0/0	t0001	1097	260	41	46	136	12	25	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	1/1	t0002	1097	169	53	33	56	6	19	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	t0003	1097	1	0	1	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	t0004	1097	1	1	0	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	t0005	1097	1	1	0	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN4_chr20_45288450_45313299	1/1	t0001	477	303	44	46	166	13	32	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0002	477	59	22	19	16	0	2	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0003	477	29	8	11	4	2	4	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0004	477	14	12	2	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0005	477	5	4	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0006	477	3	3	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0007	477	3	2	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0008	477	2	2	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0009	477	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0010	477	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0011	477	1	0	0	0	1	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	t0012	477	1	1	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATR3_chr5_139288740_139336677	1/0	t0001	2526	125	32	18	57	5	12	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/1	t0002	2527	87	8	20	37	6	15	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0003	2526	8	1	1	1	0	5	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0004	2526	8	4	4	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0005	2526	7	0	0	7	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0006	2526	5	0	0	0	4	1	copy fasta	MATR3	chr5	139288740	139336677