JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MATR3_chr5_139288740_139336677	0/0	t0007	2526	4	4	0	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0008	2526	4	0	0	4	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0009	2527	3	3	0	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0010	2527	3	0	0	3	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0011	2527	3	0	1	0	0	2	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0012	2527	3	1	2	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0013	2527	3	2	0	1	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0014	2526	2	1	1	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0015	2526	2	2	0	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0016	2527	2	2	0	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0017	2527	2	0	0	0	0	2	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0018	2527	1	0	0	0	0	1	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0019	2526	1	0	0	1	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0020	2526	1	0	1	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0021	2545	1	0	0	1	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0022	2526	1	0	0	1	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0023	2526	1	0	0	1	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0024	2526	1	0	0	1	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0025	2527	1	1	0	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0026	2527	1	1	0	0	0	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0027	2527	1	0	0	0	1	0	copy fasta	MATR3	chr5	139288740	139336677
MATR3_chr5_139288740_139336677	0/0	t0028	2527	1	0	0	1	0	0	copy fasta	MATR3	chr5	139288740	139336677
MAU2_chr19_19315829_19363754	0/0	t0001	3004	116	10	23	60	6	17	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0002	3004	23	0	8	13	0	2	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0003	3005	22	2	1	14	2	3	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0004	3004	21	16	2	0	2	1	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	1/0	t0005	3004	21	6	8	0	1	5	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0006	3004	19	0	4	8	0	7	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0007	3004	15	0	3	9	0	3	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0008	3004	11	11	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0009	3004	9	8	1	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0010	3004	8	8	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0011	3004	6	6	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0012	3005	5	0	1	4	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0013	3004	4	0	0	4	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0014	3004	4	4	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0015	3005	4	0	2	0	0	2	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0016	3004	3	3	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0017	3004	3	3	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0018	3004	3	0	3	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0019	3004	3	3	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0020	3004	3	3	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0021	3004	2	1	1	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0022	3004	2	0	0	2	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/1	t0023	3004	2	0	1	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0024	3004	2	0	2	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0025	3005	2	0	0	2	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0026	3004	2	0	0	2	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0027	2982	2	0	1	0	1	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0028	3004	2	0	0	0	2	0	copy fasta	MAU2	chr19	19315829	19363754