Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARF6_chr14_49888082_49902054	0/0	t0012	3346	2	0	0	2	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0013	3346	2	0	2	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0014	3348	2	0	0	2	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0015	3346	1	0	1	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0016	3337	1	1	0	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0017	3346	1	0	0	0	1	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0018	3346	1	1	0	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0019	3346	1	0	0	1	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0020	3346	1	0	1	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0021	3347	1	0	1	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0022	3347	1	1	0	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0023	3348	1	0	0	0	0	1	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0024	3346	1	0	1	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0025	3346	1	0	0	1	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0026	3347	1	1	0	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0027	3348	1	0	1	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARF6_chr14_49888082_49902054	0/0	t0028	3348	1	0	1	0	0	0	copy fasta	ARF6	chr14	49888082	49902054
ARFGAP1_chr20_63267813_63294790	1/1	t0001	2030	298	68	61	124	12	31	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0002	2030	12	0	5	1	2	4	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0003	2030	6	6	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0004	2030	5	5	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0005	2030	2	0	0	2	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0006	2030	2	2	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0007	2030	1	0	0	1	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0008	2030	1	0	0	1	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0009	2030	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0010	2062	1	0	0	1	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0011	2030	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0012	2030	1	0	1	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0013	2030	1	0	1	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0014	2030	1	0	0	1	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0015	2030	1	0	1	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0016	2030	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0017	2030	1	0	0	0	0	1	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0018	2030	1	0	1	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0019	2030	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0020	2030	1	0	0	1	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0021	2030	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0022	2030	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	t0023	2030	1	1	0	0	0	0	copy fasta	ARFGAP1	chr20	63267813	63294790
ARFGAP2_chr11_47159301_47181879	0/0	t0001	1208	162	35	36	53	7	31	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	1/1	t0002	1208	159	29	28	87	3	10	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0003	1208	29	5	9	12	0	3	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0004	1208	5	0	3	0	0	2	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0005	1208	4	4	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0006	1208	3	0	0	3	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0007	1208	2	0	0	0	2	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0008	1208	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0009	1208	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0010	1208	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879