JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAU2_chr19_19315829_19363754	0/0	t0029	3004	2	0	0	0	0	2	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0030	3004	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0031	3004	1	0	1	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0032	3004	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0033	3027	1	0	1	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0034	3004	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0035	3005	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0036	3004	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0037	3004	1	0	0	0	0	1	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0038	3004	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0039	3004	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0040	3004	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0041	3004	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0042	3004	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0043	3004	1	0	0	0	0	1	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0044	3005	1	0	1	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0045	3004	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0046	3005	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0047	3004	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0048	3004	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0049	3004	1	1	0	0	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0050	3005	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0051	3005	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	t0052	3004	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAVS_chr20_3841834_3881118	0/0	t0001	10102	33	1	14	18	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0002	10106	19	0	0	18	1	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0003	10107	18	0	0	16	1	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0004	10110	17	1	3	8	1	4	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0005	10111	17	1	4	6	2	4	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0006	10111	14	3	2	4	0	5	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0007	10112	14	2	4	2	5	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0008	10116	12	0	0	11	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0009	10115	10	0	0	10	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0010	10113	10	4	3	2	1	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0011	10115	9	1	0	8	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0012	10116	8	1	2	5	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0013	10099	8	8	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0014	10108	7	0	1	3	0	3	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0015	10098	7	0	3	0	2	2	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0016	10110	6	0	4	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0017	10106	5	0	0	5	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0018	10094	5	5	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0019	10112	5	2	1	1	1	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0020	10114	5	0	4	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0021	10113	5	0	4	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0022	10118	4	4	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0023	10103	4	0	3	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0024	10101	4	0	2	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0025	10102	4	0	0	3	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	1/0	t0026	10109	4	0	0	1	0	2	copy fasta	MAVS	chr20	3841834	3881118