JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAVS_chr20_3841834_3881118	0/0	t0027	10094	4	3	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0028	10120	4	4	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0029	10110	4	0	2	0	1	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0030	10115	3	0	0	3	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0031	10113	3	0	0	3	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0032	10109	3	3	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0033	10112	3	0	0	3	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0034	10122	3	3	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0035	10110	3	2	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0036	10112	3	0	0	3	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0037	10107	2	2	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0038	10117	2	0	0	0	0	2	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0039	10110	2	0	2	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0040	10098	2	2	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0041	10099	2	2	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0042	10094	2	2	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0043	10099	2	0	0	0	0	2	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0044	10114	2	2	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0045	10109	2	1	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0046	10093	2	2	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0047	10114	2	0	0	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0048	10113	2	0	0	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0049	10113	2	0	0	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0050	10112	2	0	0	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0051	10101	2	0	0	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0052	10093	2	0	2	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0053	10116	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0054	10118	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0055	10104	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0056	10112	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0057	10111	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0058	10101	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0059	10100	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0060	10114	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0061	10114	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0062	10116	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0063	10117	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0064	10121	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0065	10117	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0066	10119	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0067	10119	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0068	10117	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0069	10108	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0070	10102	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0071	10107	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0072	10115	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0073	10122	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0074	10119	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0075	10117	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0076	10114	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118