JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAVS_chr20_3841834_3881118	0/0	t0077	10089	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0078	10093	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0079	10106	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0080	10111	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0081	10103	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0082	10101	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0083	10103	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0084	10102	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0085	10103	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0086	10102	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0087	10102	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0088	10126	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0089	10113	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0090	10108	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0091	10106	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0092	10110	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0093	10106	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0094	10107	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0095	10108	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0096	10106	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0097	10106	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0098	10107	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0099	10097	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0100	10086	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0101	10110	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0102	10109	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0103	10106	1	0	0	0	1	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0104	10100	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/1	t0105	10099	1	0	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0106	10098	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0107	10098	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0108	10099	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0109	10101	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0110	10100	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0111	10099	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0112	10098	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0113	10101	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0114	10092	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0115	10100	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0116	10116	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0117	10112	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0118	10116	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0119	10115	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0120	10113	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0121	10112	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0122	10111	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0123	10108	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0124	10110	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0125	10093	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0126	10085	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118