JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAVS_chr20_3841834_3881118	0/0	t0127	10111	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0128	10115	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0129	10113	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0130	10112	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0131	10102	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0132	10112	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0133	10115	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0134	10113	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0135	10088	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0136	10110	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0137	10112	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0138	10111	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0139	10121	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0140	10116	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0141	10114	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0142	10114	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0143	10112	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0144	10113	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0145	10111	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0146	10109	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0147	10097	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0148	10092	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0149	10086	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0150	10112	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0151	10111	1	0	0	0	0	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0152	10114	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	t0153	10113	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAX_chr14_65070127_65107517	1/1	t0001	1528	133	5	26	79	8	13	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0002	1528	107	51	7	41	0	8	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0003	1528	88	13	15	40	4	16	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0004	1529	8	2	0	6	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0005	1528	6	1	5	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0006	1528	6	0	0	6	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0007	1528	4	0	3	1	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0008	1528	4	4	0	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0009	1528	2	2	0	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0010	1528	2	2	0	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0011	1529	2	0	0	1	0	1	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0012	1528	2	1	1	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0013	1528	2	0	2	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0014	1528	2	0	0	0	0	2	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0015	1528	1	1	0	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0016	1528	1	0	0	1	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0017	1528	1	1	0	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0018	1528	1	1	0	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0019	1528	1	0	0	0	0	1	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0020	1528	1	1	0	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0021	1528	1	0	1	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0022	1529	1	0	0	1	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0023	1528	1	0	0	1	0	0	copy fasta	MAX	chr14	65070127	65107517