JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAX_chr14_65070127_65107517	0/0	t0024	1528	1	0	0	0	0	1	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0025	1528	1	1	0	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0026	1528	1	0	1	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0027	1528	1	0	1	0	0	0	copy fasta	MAX	chr14	65070127	65107517
MAX_chr14_65070127_65107517	0/0	t0028	1528	1	0	0	1	0	0	copy fasta	MAX	chr14	65070127	65107517
MAZ_chr16_29801529_29816164	0/1	t0001	1107	222	41	51	90	14	25	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0002	1107	17	4	0	13	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0003	1106	10	9	1	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0004	1108	10	9	0	0	0	1	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0005	1107	8	8	0	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0006	1106	4	1	0	3	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	1/0	t0007	1107	3	2	0	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0008	1108	1	1	0	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0009	1108	1	1	0	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0010	1107	1	0	0	1	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0011	1107	1	0	1	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0012	1107	1	0	0	0	0	1	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0013	1107	1	0	1	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0014	1107	1	0	0	0	0	1	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	t0015	1107	1	0	0	1	0	0	copy fasta	MAZ	chr16	29801529	29816164
MB21D2_chr3_192791815_192922856	0/0	t0001	1588	136	36	20	52	7	21	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	1/1	t0002	1588	78	13	21	29	4	9	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0003	1588	32	1	4	26	0	1	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0004	1588	19	17	2	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0005	1588	18	17	1	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0006	1588	4	1	2	0	1	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0007	1588	3	3	0	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0008	1588	1	1	0	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0009	1588	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0010	1588	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0011	1588	1	0	1	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0012	1588	1	0	0	0	0	1	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0013	1588	1	1	0	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0014	1588	1	0	1	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	t0015	1588	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MBD1_chr18_50263846_50286523	0/1	t0001	1192	342	71	69	146	16	39	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	1/0	t0002	1192	49	16	9	20	0	3	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	t0003	1192	3	3	0	0	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	t0004	1192	3	0	0	3	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	t0005	1192	1	1	0	0	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	t0006	1192	1	1	0	0	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	t0007	1192	1	0	0	0	0	1	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	t0008	1192	1	0	0	0	0	1	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	t0009	1192	1	0	0	1	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD2_chr18_54146606_54229669	0/0	t0001	3830	71	6	17	38	2	8	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0002	3830	55	1	8	34	3	9	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	1/1	t0003	3829	28	0	14	0	3	9	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0004	3829	17	6	6	1	2	2	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0005	3830	12	10	1	0	0	1	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0006	3825	10	10	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669