JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBD2_chr18_54146606_54229669	0/0	t0007	3829	10	9	1	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0008	3830	10	0	3	5	1	1	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0009	3829	6	6	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0010	3829	6	6	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0011	3830	6	5	1	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0012	3831	6	1	0	4	0	1	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0013	3830	5	5	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0014	3829	5	0	1	2	2	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0015	3831	4	1	0	2	0	1	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0016	3830	4	4	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0017	3830	4	1	0	3	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0018	3830	3	0	1	2	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0019	3830	2	2	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0020	3830	2	0	0	2	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0021	3831	2	0	1	0	0	1	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0022	3829	2	2	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0023	3829	2	2	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0024	3830	2	0	0	2	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0025	3830	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0026	3831	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0027	3830	1	0	0	0	0	1	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0028	3829	1	0	1	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0029	3830	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0030	3830	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0031	3818	1	0	1	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0032	3829	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0033	3831	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0034	3829	1	0	0	0	1	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0035	3831	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0036	3829	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0037	3829	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0038	3830	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0039	3830	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0040	3830	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0041	3829	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0042	3831	1	0	1	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0043	3830	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0044	3830	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0045	3830	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0046	3832	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0047	3830	1	1	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0048	3829	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0049	3830	1	0	0	1	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	t0050	3830	1	0	1	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD3L1_chr19_8827377_8848319	1/1	t0001	309	428	98	82	190	12	44	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L2B_chr19_7013969_7026431	0/0	t0001	227	329	60	65	149	18	37	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	t0002	227	6	6	0	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	t0003	226	6	1	4	0	0	1	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	t0004	227	4	0	0	4	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	t0005	227	2	0	0	0	0	2	copy fasta	MBD3L2B	chr19	7013969	7026431