JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBD3L2B_chr19_7013969_7026431	0/0	t0006	161	1	0	1	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	t0007	227	1	1	0	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	t0008	227	1	0	0	1	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2_chr19_7044321_7056735	1/1	t0001	167	132	25	24	61	4	16	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	t0002	167	118	11	27	58	2	20	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	t0003	167	5	4	1	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	t0004	167	1	1	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	t0005	167	1	1	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	t0006	167	1	0	0	1	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L3_chr19_7051207_7063676	0/0	t0000	0	3	0	0	2	1	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	t0001	187	243	36	54	109	11	33	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	t0002	187	30	3	1	23	0	3	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	t0003	187	10	2	3	1	2	2	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	t0004	187	1	1	0	0	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	t0005	187	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L4_chr19_7032749_7045179	0/0	t0000	0	2	1	1	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	t0001	148	184	23	38	84	8	31	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	t0002	148	71	19	17	26	4	5	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	t0003	147	2	1	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	t0004	147	1	0	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	t0005	148	1	0	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	t0006	148	1	0	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L5_chr19_7025578_7038011	1/0	t0001	152	225	38	46	108	7	25	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	t0002	152	24	10	2	6	3	3	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3_chr19_1568596_1597865	0/0	t0001	4803	96	19	8	61	0	8	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/1	t0002	4803	53	1	19	13	7	12	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0003	4799	48	0	8	40	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0004	4803	24	2	10	8	1	3	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0005	4803	24	2	8	2	1	11	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0006	4803	23	22	1	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0007	4803	15	2	9	0	4	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0008	4803	11	0	7	4	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0009	4799	6	0	0	6	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0010	4803	6	1	5	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0011	4803	6	2	3	0	1	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0012	4803	6	6	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0013	4799	5	0	0	5	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0014	4804	5	0	0	5	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0015	4803	4	4	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0016	4803	3	1	0	2	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0017	4803	2	2	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0018	4799	2	0	0	2	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0019	4799	2	0	0	1	0	1	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0020	4803	2	2	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0021	4803	2	0	2	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0022	4804	2	2	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0023	4804	2	2	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0024	4803	2	2	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0025	4803	2	0	0	2	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0026	4804	2	0	2	0	0	0	copy fasta	MBD3	chr19	1568596	1597865