JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBD3_chr19_1568596_1597865	0/0	t0027	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0028	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0029	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0030	4799	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0031	4799	1	0	0	0	0	1	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0032	4799	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0033	4799	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0034	4799	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	1/0	t0035	4803	1	0	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0036	4803	1	0	0	0	0	1	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0037	4786	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0038	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0039	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0040	4803	1	0	0	0	1	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0041	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0042	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0043	4803	1	0	1	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0044	4804	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0045	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0046	4803	1	0	0	0	0	1	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0047	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0048	4802	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0049	4803	1	0	1	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0050	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0051	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0052	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0053	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0054	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0055	4804	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0056	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0057	4803	1	0	0	0	0	1	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0058	4803	1	0	0	0	1	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0059	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0060	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0061	4804	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0062	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0063	4787	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0064	4803	1	0	1	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0065	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0066	4803	1	0	0	0	0	1	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0067	4803	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0068	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0069	4803	1	0	1	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0070	4799	1	0	0	1	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	t0071	4803	1	1	0	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD4_chr3_129425947_129444948	1/0	t0001	670	313	69	50	156	10	27	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	t0002	670	46	1	22	6	2	15	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/1	t0003	670	28	9	6	5	2	5	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	t0004	670	19	15	4	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	t0005	670	2	0	0	2	0	0	copy fasta	MBD4	chr3	129425947	129444948