JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBD4_chr3_129425947_129444948	0/0	t0006	670	2	1	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	t0007	670	1	0	0	0	0	1	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	t0008	670	1	1	0	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD5_chr2_148016091_148521971	0/0	t0001	5549	56	6	10	30	1	9	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/1	t0002	5549	53	26	13	3	2	8	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0003	5549	12	4	1	5	2	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0004	5549	11	2	2	4	1	2	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0005	5549	8	4	0	1	1	2	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0006	5549	7	7	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0007	5549	4	4	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	1/0	t0008	5549	4	3	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0009	5549	3	0	0	3	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0010	5549	3	0	0	2	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0011	5549	3	3	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0012	5549	2	2	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0013	5550	2	0	1	0	1	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0014	5549	2	2	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0015	5549	2	0	1	1	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0016	5549	1	0	0	1	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0017	5549	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0018	5549	1	0	1	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0019	5550	1	0	1	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0020	5549	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0021	5549	1	0	1	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0022	5549	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0023	5549	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0024	5549	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0025	5549	1	0	1	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0026	5549	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0027	5549	1	0	0	1	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0028	5549	1	0	0	1	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0029	5567	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0030	5534	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	t0031	5549	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD6_chr12_57517824_57535148	1/1	t0001	1191	213	63	38	83	5	22	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0002	1193	24	9	4	9	1	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0003	1192	20	1	3	13	0	3	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0004	1191	17	5	2	8	0	2	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0005	1192	14	3	0	10	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0006	1191	9	0	5	3	1	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0007	1193	8	2	0	5	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0008	1192	6	1	3	2	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0009	1191	5	0	0	5	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0010	1194	4	1	0	1	0	2	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0011	1191	3	0	0	0	2	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0012	1191	3	0	0	3	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0013	1191	2	1	1	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0014	1191	2	1	0	0	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0015	1193	1	0	1	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0016	1191	1	0	0	1	0	0	copy fasta	MBD6	chr12	57517824	57535148