JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBD6_chr12_57517824_57535148	0/0	t0017	1193	1	0	0	0	1	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0018	1193	1	0	1	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0019	1192	1	1	0	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0020	1191	1	0	0	0	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0021	1191	1	0	0	1	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0022	1191	1	0	0	1	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0023	1191	1	0	0	0	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	t0024	1191	1	0	0	1	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBIP_chr14_36293564_36325637	0/1	t0001	569	170	25	36	68	9	31	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	1/0	t0002	569	49	30	6	9	2	1	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0003	569	29	0	6	22	0	1	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0004	569	26	22	3	1	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0005	572	22	0	2	19	0	1	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0006	569	5	5	0	0	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0007	569	5	5	0	0	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0008	569	3	0	1	0	2	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0009	569	1	1	0	0	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0010	569	1	0	0	0	1	0	copy fasta	MBIP	chr14	36293564	36325637
MBIP_chr14_36293564_36325637	0/0	t0011	572	1	0	0	1	0	0	copy fasta	MBIP	chr14	36293564	36325637
MBL2_chr10_52760380_52777784	0/1	t0001	2815	185	12	38	100	10	24	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0002	2815	106	46	24	27	1	8	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	1/0	t0003	2815	64	18	7	30	0	8	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0004	2815	33	8	2	23	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0005	2815	6	2	1	3	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0006	2815	6	1	3	1	0	1	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0007	2815	3	3	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0008	2815	2	0	2	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0009	2815	2	1	1	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0010	2815	2	0	0	2	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0011	2815	2	0	1	0	1	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0012	2815	2	0	0	0	0	2	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0013	2815	2	1	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0014	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0015	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0016	2815	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0017	2815	1	0	0	0	0	1	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0018	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0019	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0020	2815	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0021	2815	1	0	0	0	0	1	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0022	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0023	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0024	2815	1	0	0	0	0	1	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0025	2815	1	0	1	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0026	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0027	2815	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0028	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0029	1421	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0030	2815	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBL2_chr10_52760380_52777784	0/0	t0031	2815	1	1	0	0	0	0	copy fasta	MBL2	chr10	52760380	52777784