Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARFGAP2_chr11_47159301_47181879	0/0	t0011	1208	1	0	0	1	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0012	1208	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0013	1208	1	0	0	0	0	1	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0014	1208	1	1	0	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0015	1208	1	0	1	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0016	1208	1	0	0	0	0	1	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	t0017	1208	1	0	1	0	0	0	copy fasta	ARFGAP2	chr11	47159301	47181879
ARFGAP3_chr22_42791502_42862273	1/1	t0001	1178	237	29	39	136	6	25	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0002	1178	83	29	22	8	7	17	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0003	1178	8	8	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0004	1178	7	6	1	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0005	1178	4	4	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0006	1178	4	3	1	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0007	1178	3	1	1	0	1	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0008	1178	3	3	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0009	1178	3	0	0	3	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0010	1178	2	2	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0011	1178	2	0	0	2	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0012	1178	1	1	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0013	1178	1	0	0	1	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0014	1178	1	1	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0015	1178	1	1	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0016	1178	1	0	0	0	0	1	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	t0017	1178	1	0	0	0	0	1	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGEF1_chr8_67192658_67348781	1/1	t0001	1771	190	53	43	68	2	22	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0002	1771	4	4	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0003	1771	4	4	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0004	1771	2	2	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0005	1771	2	2	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0006	1771	2	2	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0007	1771	1	0	0	1	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0008	1771	1	0	0	1	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0009	1771	1	0	1	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	t0010	1771	1	1	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF2_chr20_48916711_49041693	1/0	t0001	3674	190	17	38	101	4	29	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/1	t0002	3675	59	35	7	13	1	2	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0003	3675	29	2	9	12	2	4	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0004	3675	25	0	3	19	0	3	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0005	3674	16	15	1	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0006	3675	4	4	0	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0007	3674	4	0	1	2	0	1	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0008	3675	3	3	0	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0009	3675	3	0	1	2	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0010	3674	2	0	2	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0011	3675	2	0	0	2	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0012	3674	2	0	1	0	1	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0013	3675	2	0	0	2	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0014	3675	2	2	0	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0015	3674	1	1	0	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	t0016	3675	1	1	0	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693