JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBL2_chr10_52760380_52777784	0/0	t0032	2815	1	0	0	1	0	0	copy fasta	MBL2	chr10	52760380	52777784
MBLAC1_chr7_100121967_100133495	1/1	t0001	426	389	92	70	167	14	44	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC1_chr7_100121967_100133495	0/0	t0002	426	1	0	0	1	0	0	copy fasta	MBLAC1	chr7	100121967	100133495
MBLAC2_chr5_90453209_90479771	1/1	t0001	3438	308	48	53	159	11	35	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0002	3438	16	7	7	0	1	1	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0003	3436	5	4	1	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0004	3436	5	5	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0005	3438	4	4	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0006	3438	4	4	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0007	3438	3	2	1	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0008	3438	3	3	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0009	3438	2	0	0	0	0	2	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0010	3438	2	1	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0011	3436	2	2	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0012	3438	2	2	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0013	3438	2	0	0	0	0	2	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0014	3438	2	2	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0015	3438	2	2	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0016	3438	1	0	0	0	0	1	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0017	3438	1	0	0	0	0	1	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0018	3438	1	1	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0019	3438	1	0	1	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0020	3438	1	1	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0021	3438	1	0	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0022	3438	1	0	1	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0023	3438	1	0	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0024	3438	1	1	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0025	3438	1	0	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0026	3438	1	0	0	0	0	1	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0027	3438	1	0	0	1	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0028	3438	1	1	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0029	3438	1	0	0	0	0	1	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0030	3438	1	1	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBLAC2_chr5_90453209_90479771	0/0	t0031	3438	1	1	0	0	0	0	copy fasta	MBLAC2	chr5	90453209	90479771
MBNL1_chr3_152263929_152470780	1/1	t0001	4368	206	59	30	86	8	21	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0002	4368	70	6	13	38	2	11	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0003	4369	14	7	0	6	0	1	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0004	4368	12	0	8	0	4	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0005	4368	8	7	1	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0006	4368	5	0	5	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0007	4368	2	2	0	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0008	4368	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0009	4368	1	0	0	0	0	1	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0010	4368	1	1	0	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0011	4368	1	0	1	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0012	4368	1	1	0	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0013	4368	1	1	0	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0014	4368	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0015	4368	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0016	4368	1	1	0	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780