JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBNL1_chr3_152263929_152470780	0/0	t0017	4368	1	0	0	0	0	1	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0018	4368	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0019	4368	1	0	0	0	0	1	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0020	4368	1	0	1	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0021	4384	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0022	4368	1	0	0	0	1	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0023	4368	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0024	4369	1	0	1	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0025	4369	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0026	4368	1	1	0	0	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0027	4368	1	0	0	1	0	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL1_chr3_152263929_152470780	0/0	t0028	4368	1	0	0	0	1	0	copy fasta	MBNL1	chr3	152263929	152470780
MBNL2_chr13_97217333_97399120	1/1	t0001	3475	181	53	41	52	12	21	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0002	3475	30	10	1	15	0	4	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0003	3475	11	0	5	3	0	3	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0004	3475	8	7	1	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0005	3475	6	4	2	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0006	3475	5	5	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0007	3475	2	2	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0008	3475	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0009	3475	1	0	1	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0010	3475	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0011	3475	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0012	3475	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0013	3475	1	0	1	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0014	3475	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0015	3475	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0016	3475	1	0	1	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0017	3475	1	1	0	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL2_chr13_97217333_97399120	0/0	t0018	3475	1	0	1	0	0	0	copy fasta	MBNL2	chr13	97217333	97399120
MBNL3_chrX_132364320_132494038	0/1	t0001	11236	80	5	13	49	2	10	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0002	11236	17	15	2	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	1/0	t0003	11238	16	2	3	7	2	1	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0004	11236	9	0	2	0	4	3	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0005	11236	9	3	2	4	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0006	11236	4	4	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0007	11236	4	4	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0008	11236	3	0	0	0	0	3	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0009	11236	3	0	3	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0010	11238	3	3	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0011	11238	3	3	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0012	11234	2	0	0	2	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0013	11236	2	0	2	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0014	11236	2	2	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0015	11236	2	2	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0016	11238	2	0	0	2	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0017	11228	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0018	11236	1	0	0	0	0	1	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0019	11236	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0020	11236	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038