JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBNL3_chrX_132364320_132494038	0/0	t0021	11233	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0022	11236	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0023	11236	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0024	11272	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0025	11234	1	0	1	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0026	11240	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0027	11238	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0028	11237	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0029	11236	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0030	11236	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0031	11236	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0032	11272	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0033	11237	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0034	11240	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0035	11234	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0036	11238	1	0	1	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0037	11236	1	0	0	0	1	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0038	11238	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0039	11236	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0040	11236	1	0	1	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0041	11236	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0042	11238	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0043	11274	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0044	11238	1	1	0	0	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0045	11236	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBNL3_chrX_132364320_132494038	0/0	t0046	11236	1	0	0	1	0	0	copy fasta	MBNL3	chrX	132364320	132494038
MBOAT1_chr6_20094684_20217469	0/0	t0001	2833	70	5	13	47	2	3	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0002	2835	34	3	7	17	1	6	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/1	t0003	2832	28	1	5	12	0	9	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0004	2836	27	2	5	14	0	6	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0005	2833	17	0	2	11	2	2	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	1/0	t0006	2838	13	2	6	3	0	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0007	2837	12	3	2	3	1	3	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0008	2834	11	2	2	6	0	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0009	2824	8	8	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0010	2835	8	5	1	2	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0011	2839	5	3	1	0	0	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0012	2837	5	3	0	0	1	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0013	2834	4	1	1	0	1	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0014	2836	4	4	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0015	2838	4	4	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0016	2834	3	1	0	1	0	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0017	2836	3	0	0	0	2	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0018	2833	3	0	1	1	0	1	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0019	2835	3	3	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0020	2840	3	2	1	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0021	2833	2	0	0	2	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0022	2833	2	0	1	1	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0023	2838	2	0	0	2	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0024	2839	2	0	2	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469