JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBP_chr18_76973833_77137783	0/0	t0030	1824	1	0	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0031	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0032	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0033	1824	1	0	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/1	t0034	1824	1	0	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0035	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0036	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0037	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0038	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0039	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0040	1824	1	0	0	0	0	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0041	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0042	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0043	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0044	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0045	1824	1	1	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0046	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0047	1824	1	0	0	0	0	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0048	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0049	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0050	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0051	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0052	1824	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0053	1813	1	0	0	0	0	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0054	1825	1	0	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBTD1_chr17_51172425_51265049	0/0	t0001	3467	14	0	3	8	1	2	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0002	3469	14	1	3	8	1	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0003	3485	12	12	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	1/0	t0004	3479	12	0	6	4	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0005	3471	11	1	2	7	1	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/1	t0006	3470	5	0	2	0	0	2	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0007	3525	5	1	2	1	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0008	3479	5	2	1	0	0	2	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0009	3505	5	0	2	3	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0010	3478	5	2	1	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0011	3479	5	1	1	0	2	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0012	3479	5	0	1	4	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0013	3476	4	4	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0014	3494	4	0	0	4	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0015	3509	4	0	0	3	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0016	3504	4	0	1	3	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0017	3497	4	0	0	2	2	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0018	3473	4	4	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0019	3478	4	2	0	1	1	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0020	3479	4	1	1	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0021	3507	4	0	4	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0022	3479	4	4	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0023	3467	4	2	1	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0024	3471	4	1	1	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0025	3473	4	0	0	3	0	1	copy fasta	MBTD1	chr17	51172425	51265049