JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBTD1_chr17_51172425_51265049	0/0	t0026	3473	4	0	0	3	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0027	3475	4	0	0	2	1	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0028	3442	3	1	2	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0029	3464	3	2	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0030	3469	3	3	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0031	3471	3	3	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0032	3499	3	0	3	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0033	3475	3	2	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0034	3501	3	0	0	3	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0035	3503	3	0	3	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0036	3522	3	0	1	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0037	3513	3	0	2	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0038	3478	3	2	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0039	3477	3	0	2	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0040	3477	3	0	0	2	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0041	3487	3	0	0	1	0	2	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0042	3503	2	2	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0043	3476	2	0	0	1	1	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0044	3479	2	2	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0045	3479	2	2	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0046	3467	2	0	0	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0047	3523	2	0	1	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0048	3476	2	1	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0049	3527	2	0	0	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0050	3514	2	0	1	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0051	3502	2	0	1	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0052	3505	2	0	0	1	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0053	3503	2	0	0	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0054	3509	2	0	1	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0055	3526	2	0	1	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0056	3535	2	0	0	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0057	3486	2	2	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0058	3485	2	2	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0059	3505	2	2	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0060	3466	2	0	0	2	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0061	3469	2	0	1	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0062	3481	2	0	1	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0063	3481	2	0	1	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0064	3502	2	2	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0065	3458	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0066	3466	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0067	3479	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0068	3439	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0069	3473	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0070	3475	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0071	3531	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0072	3477	1	0	0	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0073	3479	1	0	0	0	1	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0074	3453	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0075	3479	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049