JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBTD1_chr17_51172425_51265049	0/0	t0076	3479	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0077	3480	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0078	3462	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0079	3489	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0080	3463	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0081	3467	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0082	3467	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0083	3470	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0084	3469	1	0	0	0	1	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0085	3507	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0086	3499	1	0	0	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0087	3473	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0088	3525	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0089	3521	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0090	3495	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0091	3471	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0092	3490	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0093	3521	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0094	3523	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0095	3503	1	0	0	0	1	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0096	3505	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0097	3510	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0098	3499	1	0	0	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0099	3503	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0100	3496	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0101	3477	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0102	3523	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0103	3514	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0104	3517	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0105	3519	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0106	3498	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0107	3535	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0108	3494	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0109	3497	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0110	3494	1	0	0	0	1	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0111	3516	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0112	3499	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0113	3496	1	0	0	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0114	3527	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0115	3479	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0116	3498	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0117	3533	1	0	0	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0118	3501	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0119	3503	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0120	3507	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0121	3507	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0122	3511	1	0	0	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0123	3475	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0124	3520	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0125	3524	1	0	0	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049