JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBTD1_chr17_51172425_51265049	0/0	t0126	3531	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0127	3520	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0128	3524	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0129	3531	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0130	3532	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0131	3507	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0132	3539	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0133	3533	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0134	3515	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0135	3532	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0136	3493	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0137	3507	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0138	3477	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0139	3473	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0140	3477	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0141	3443	1	0	0	0	0	1	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0142	3451	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0143	3465	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0144	3467	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0145	3467	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0146	3465	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0147	3469	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0148	3473	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0149	3678	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0150	3475	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0151	3475	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0152	3474	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0153	3476	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0154	3501	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0155	3479	1	1	0	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0156	3534	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0157	3471	1	0	0	1	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTD1_chr17_51172425_51265049	0/0	t0158	3524	1	0	1	0	0	0	copy fasta	MBTD1	chr17	51172425	51265049
MBTPS1_chr16_84048763_84121942	0/0	t0001	1219	96	2	18	62	6	8	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0002	1219	79	13	6	56	0	4	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0003	1219	64	6	15	30	6	7	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0004	1219	34	2	18	7	0	7	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0005	1219	23	3	5	12	1	2	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0006	1219	13	11	2	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0007	1219	13	1	1	7	0	4	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/1	t0008	1219	13	8	2	0	0	2	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0009	1219	13	8	4	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	1/0	t0010	1219	8	5	1	0	0	1	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0011	1219	7	7	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0012	1219	7	5	0	2	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0013	1219	5	0	0	3	1	1	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0014	1219	4	2	1	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0015	1219	3	0	0	2	1	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0016	1219	3	2	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0017	1219	3	0	0	3	0	0	copy fasta	MBTPS1	chr16	84048763	84121942