JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBTPS1_chr16_84048763_84121942	0/0	t0018	1219	3	3	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0019	1219	2	0	0	2	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0020	1219	2	0	0	2	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0021	1219	2	0	0	0	0	2	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0022	1219	2	2	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0023	1219	2	2	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0024	1219	2	2	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0025	1219	2	0	0	2	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0026	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0027	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0028	1219	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0029	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0030	1219	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0031	1219	1	0	1	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0032	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0033	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0034	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0035	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0036	1219	1	0	0	0	1	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0037	1219	1	0	0	0	0	1	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0038	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0039	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0040	1219	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0041	1219	1	0	0	0	0	1	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0042	1219	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0043	1219	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	t0044	1219	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS2_chrX_21834617_21890423	0/0	t0001	2887	161	27	28	89	5	12	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	1/1	t0002	2887	102	30	11	44	3	12	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0003	2887	22	13	3	1	0	5	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0004	2887	9	0	1	8	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0005	2886	2	0	2	0	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0006	2887	1	1	0	0	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0007	2886	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0008	2887	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0009	2886	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0010	2887	1	1	0	0	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0011	2887	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0012	2886	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0013	2887	1	1	0	0	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0014	2887	1	0	1	0	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0015	2887	1	0	0	0	1	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0016	2887	1	0	0	0	0	1	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	t0017	2887	1	1	0	0	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MB_chr22_35601764_35622329	1/1	t0001	606	347	75	61	151	13	45	copy fasta	MB	chr22	35601764	35622329
MB_chr22_35601764_35622329	0/0	t0002	605	26	3	5	15	3	0	copy fasta	MB	chr22	35601764	35622329
MB_chr22_35601764_35622329	0/0	t0003	606	1	0	0	0	0	1	copy fasta	MB	chr22	35601764	35622329
MB_chr22_35601764_35622329	0/0	t0004	606	1	1	0	0	0	0	copy fasta	MB	chr22	35601764	35622329
MB_chr22_35601764_35622329	0/0	t0005	606	1	1	0	0	0	0	copy fasta	MB	chr22	35601764	35622329
MC1R_chr16_89913862_89925972	0/0	t0001	1158	213	42	42	100	3	26	copy fasta	MC1R	chr16	89913862	89925972