JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MC1R_chr16_89913862_89925972	1/1	t0002	1158	67	6	26	17	8	8	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0003	1158	59	22	2	32	2	1	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0004	1158	18	16	2	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0005	1158	13	8	1	0	0	4	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0006	1158	11	1	5	0	3	2	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0007	1158	4	0	0	3	0	1	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0008	1158	3	0	3	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0009	1158	2	2	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0010	1158	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0011	1158	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0012	1158	1	0	0	0	0	1	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0013	1158	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0014	1158	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	t0015	1158	1	0	0	0	0	1	copy fasta	MC1R	chr16	89913862	89925972
MC2R_chr18_13877044_13920536	0/0	t0001	2749	59	0	24	24	3	8	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0002	2727	53	5	4	44	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0003	2759	22	2	3	16	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0004	2745	14	1	7	0	3	3	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0005	2747	14	0	1	12	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0006	2757	12	0	5	7	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0007	2753	11	0	0	11	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0008	2753	10	9	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/1	t0009	2749	10	3	2	3	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0010	2751	10	2	1	7	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0011	2740	8	3	0	1	0	4	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0012	2761	7	0	2	5	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0013	2727	7	3	1	0	0	3	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0014	2753	7	0	1	2	1	3	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0015	2757	6	1	0	2	0	3	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0016	2749	6	1	2	1	1	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0017	2755	5	0	0	1	0	4	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0018	2727	4	4	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	1/0	t0019	2759	4	2	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0020	2745	4	0	0	2	2	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0021	2751	4	0	0	4	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0022	2753	4	0	1	2	1	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0023	2751	4	4	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0024	2755	3	3	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0025	2753	3	0	0	3	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0026	2755	3	0	0	3	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0027	2765	3	0	0	3	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0028	2751	3	0	0	3	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0029	2745	3	3	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0030	2757	3	3	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0031	2729	3	3	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0032	2755	3	3	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0033	2727	2	2	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0034	2755	2	2	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0035	2761	2	0	1	0	1	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0036	2761	2	0	0	1	0	1	copy fasta	MC2R	chr18	13877044	13920536