JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MC2R_chr18_13877044_13920536	0/0	t0037	2757	2	0	2	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0038	2747	2	0	1	0	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0039	2749	2	0	0	0	2	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0040	2753	2	0	0	2	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0041	2757	2	0	0	2	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0042	2759	2	0	0	2	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0043	2755	2	1	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0044	2753	2	2	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0045	2757	2	1	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0046	2759	2	2	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0047	2761	2	0	0	2	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0048	2765	2	0	0	1	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0049	2747	2	1	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0050	2747	2	2	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0051	2753	2	0	0	2	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0052	2753	2	0	0	2	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0053	2755	2	0	0	2	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0054	2757	2	0	0	2	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0055	2757	2	0	0	0	0	2	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0056	2751	2	0	1	0	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0057	2743	2	0	0	0	0	2	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0058	2753	2	2	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0059	2749	2	2	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0060	2757	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0061	2757	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0062	2757	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0063	2763	1	0	0	0	1	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0064	2745	1	0	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0065	2747	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0066	2751	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0067	2753	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0068	2755	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0069	2759	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0070	2759	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0071	2740	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0072	2755	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0073	2761	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0074	2747	1	0	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0075	2749	1	0	0	0	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0076	2761	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0077	2751	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0078	2757	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0079	2759	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0080	2763	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0081	2757	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0082	2757	1	0	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0083	2755	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0084	2763	1	0	0	0	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0085	2759	1	0	0	0	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0086	2749	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536