JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MC2R_chr18_13877044_13920536	0/0	t0087	2747	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0088	2729	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0089	2729	1	0	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0090	2723	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0091	2761	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0092	2751	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0093	2749	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0094	2747	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0095	2749	1	0	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0096	2751	1	0	0	0	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0097	2753	1	0	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0098	2757	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0099	2763	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0100	2747	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0101	2735	1	0	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0102	2747	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0103	2747	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0104	2749	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0105	2753	1	0	0	0	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0106	2743	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0107	2747	1	0	0	0	0	1	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0108	2747	1	0	0	0	1	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	t0109	2745	1	0	1	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC3R_chr20_56243732_56254815	1/1	t0001	113	331	42	74	158	15	40	copy fasta	MC3R	chr20	56243732	56254815
MC3R_chr20_56243732_56254815	0/0	t0002	113	128	57	6	52	3	10	copy fasta	MC3R	chr20	56243732	56254815
MC3R_chr20_56243732_56254815	0/0	t0003	113	1	1	0	0	0	0	copy fasta	MC3R	chr20	56243732	56254815
MC4R_chr18_60366062_60377775	1/1	t0001	716	388	80	79	181	8	38	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	t0002	716	27	8	1	17	0	1	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	t0003	716	9	9	0	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	t0004	716	2	0	0	2	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	t0005	716	1	0	0	0	0	1	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	t0006	716	1	1	0	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC5R_chr18_13819149_13832323	1/1	t0001	746	237	46	43	105	8	33	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0002	746	89	25	17	36	5	6	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0003	740	69	6	14	46	1	2	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0004	746	15	13	2	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0005	740	8	8	0	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0006	746	4	0	0	4	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0007	746	4	2	0	2	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0008	746	2	0	0	2	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0009	746	1	0	1	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0010	746	1	0	0	1	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0011	746	1	0	0	0	0	1	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	t0012	687	1	0	1	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MCAM_chr11_119303529_119322130	0/1	t0001	1384	81	9	22	37	7	5	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0002	1384	46	7	11	17	2	9	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0003	1384	37	12	6	19	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0004	1384	34	1	12	15	2	4	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0005	1384	26	0	6	13	2	5	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0006	1384	20	0	0	18	0	2	copy fasta	MCAM	chr11	119303529	119322130