JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCAM_chr11_119303529_119322130	0/0	t0007	1384	20	11	2	6	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0008	1387	19	4	4	2	5	4	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0009	1384	18	1	2	14	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0010	1384	13	0	1	10	0	2	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0011	1384	9	0	2	7	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0012	1384	7	0	0	6	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0013	1384	6	0	1	5	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0014	1384	6	6	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0015	1384	6	0	1	2	0	3	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0016	1387	6	0	1	4	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0017	1384	5	1	3	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0018	1384	5	0	0	5	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0019	1384	5	4	1	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0020	1384	4	0	0	4	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0021	1384	4	4	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0022	1388	3	0	0	3	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0023	1384	3	3	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0024	1384	3	0	0	3	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0025	1384	3	0	0	3	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0026	1384	3	3	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0027	1384	3	0	0	0	0	3	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0028	1384	3	0	0	3	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0029	1384	3	0	0	3	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	1/0	t0030	1387	3	0	1	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0031	1384	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0032	1388	2	0	0	2	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0033	1380	2	1	0	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0034	1384	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0035	1388	2	0	0	2	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0036	1384	2	0	0	2	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0037	1384	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0038	1384	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0039	1384	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0040	1384	2	0	1	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0041	1384	2	0	0	2	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0042	1387	2	0	2	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0043	1387	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0044	1380	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0045	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0046	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0047	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0048	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0049	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0050	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0051	1388	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0052	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0053	1384	1	0	1	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0054	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0055	1388	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0056	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130