JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCAM_chr11_119303529_119322130	0/0	t0057	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0058	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0059	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0060	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0061	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0062	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0063	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0064	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0065	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0066	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0067	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0068	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0069	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0070	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0071	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0072	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0073	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0074	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0075	1380	1	0	0	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0076	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0077	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0078	1380	1	0	0	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0079	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0080	1384	1	0	0	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0081	1384	1	0	0	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0082	1384	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0083	1384	1	0	1	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0084	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0085	1384	1	0	0	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0086	1380	1	0	0	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0087	1388	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0088	1384	1	0	1	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0089	1384	1	0	0	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0090	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0091	1387	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0092	1387	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0093	1387	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0094	1387	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	t0095	1384	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAT_chr22_43127209_43148398	0/1	t0001	885	168	8	35	95	12	17	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	1/0	t0002	885	134	70	26	16	6	15	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0003	885	83	0	16	56	0	11	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0004	885	9	6	3	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0005	885	7	7	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0006	885	6	0	0	6	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0007	885	3	0	3	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0008	885	2	2	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0009	885	1	1	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0010	885	1	0	0	0	0	1	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0011	885	1	0	0	1	0	0	copy fasta	MCAT	chr22	43127209	43148398