JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCAT_chr22_43127209_43148398	0/0	t0012	885	1	0	1	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0013	885	1	0	0	1	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	t0014	885	1	0	0	1	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCCC1_chr3_183010218_183104496	1/1	t0001	277	342	90	62	146	8	34	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	t0002	277	1	1	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	t0003	277	1	1	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC2_chr5_71582340_71663706	0/0	t0001	1933	119	11	22	76	2	8	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0002	1933	107	16	18	56	2	15	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	1/0	t0003	1933	47	24	10	7	2	3	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0004	1933	46	12	5	14	2	13	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0005	1933	5	0	2	3	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0006	1933	4	4	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0007	1933	2	1	1	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0008	1933	2	2	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0009	1933	2	2	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0010	1933	2	2	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0011	1933	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0012	1933	1	0	0	1	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0013	1933	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0014	1933	1	0	1	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0015	1933	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0016	1933	1	0	0	0	0	1	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0017	1933	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0018	1933	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0019	1933	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0020	1933	1	0	1	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0021	1933	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/1	t0022	1933	1	0	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0023	1933	1	0	0	1	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	t0024	1933	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCD1_chr6_31523962_31535232	0/0	t0001	351	335	78	60	146	14	37	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	t0002	351	47	9	9	25	1	3	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/1	t0003	351	44	4	11	26	0	2	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	t0004	351	7	0	5	0	1	1	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	t0005	351	5	0	0	4	0	1	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	t0006	351	4	0	0	4	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	t0007	351	2	1	1	0	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	t0008	351	1	0	0	1	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCC_chr5_113017106_113493453	0/1	t0001	5239	35	4	11	14	2	3	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	1/0	t0002	5236	24	0	5	18	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0003	5236	12	2	0	7	1	2	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0004	5235	11	5	2	0	2	2	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0005	5235	7	4	0	3	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0006	5239	5	5	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0007	5239	5	5	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0008	5236	4	3	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0009	5238	4	3	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0010	5239	3	3	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0011	5235	3	3	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0012	5240	3	0	0	2	0	1	copy fasta	MCC	chr5	113017106	113493453