JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCC_chr5_113017106_113493453	0/0	t0013	5236	3	0	2	0	1	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0014	5235	2	0	2	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0015	5233	2	1	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0016	5237	2	0	2	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0017	5237	2	2	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0018	5239	2	1	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0019	5238	2	0	1	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0020	5236	2	2	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0021	5240	2	2	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0022	5236	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0023	5240	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0024	5236	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0025	5237	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0026	5236	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0027	5240	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0028	5235	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0029	5235	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0030	5236	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0031	5235	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0032	5237	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0033	5236	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0034	5236	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0035	5238	1	0	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0036	5237	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0037	5237	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0038	5238	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0039	5234	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0040	5239	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0041	5236	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0042	5237	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0043	5237	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0044	5239	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0045	5240	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	t0046	5239	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCEE_chr2_71104687_71135229	1/1	t0001	294	391	77	76	179	12	45	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	t0002	292	27	21	2	3	0	1	copy fasta	MCEE	chr2	71104687	71135229
MCEMP1_chr19_7672090_7684829	0/1	t0001	746	220	18	54	115	9	23	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0002	745	67	43	6	8	3	7	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	1/0	t0003	747	59	2	9	34	0	13	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0004	745	31	3	7	18	3	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0005	746	16	4	0	12	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0006	746	7	0	2	4	0	1	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0007	747	7	0	2	2	3	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0008	745	5	5	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0009	745	4	4	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0010	746	3	3	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0011	746	3	0	3	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0012	746	3	3	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0013	745	3	3	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0014	745	2	2	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829