JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCEMP1_chr19_7672090_7684829	0/0	t0015	746	2	2	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0016	747	2	2	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0017	745	2	2	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0018	745	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0019	746	1	0	1	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0020	746	1	0	0	0	0	1	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0021	746	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0022	746	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0023	746	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0024	746	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0025	744	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0026	746	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0027	747	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0028	747	1	0	0	0	0	1	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	t0029	745	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCF2L2_chr3_183173041_183433619	0/0	t0001	1978	76	14	13	35	2	12	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	1/0	t0002	1982	33	15	10	5	0	2	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0003	1982	26	5	4	15	0	2	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0004	2002	4	4	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0005	1982	4	3	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0006	1986	3	2	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0007	1982	3	2	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0008	1982	3	1	2	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0009	1977	3	3	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0010	1998	2	2	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0011	1978	2	2	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0012	1982	2	0	2	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0013	1994	2	1	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0014	1986	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0015	1982	1	0	0	1	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0016	1978	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/1	t0017	1978	1	0	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0018	2010	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0019	2006	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0020	1978	1	0	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0021	1982	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0022	1982	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0023	1994	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0024	1978	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0025	1978	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	t0026	1981	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L_chr13_112964214_113104742	0/0	t0001	3050	51	8	22	9	5	7	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0002	3050	15	1	4	8	0	2	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0003	3051	6	3	2	0	0	1	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0004	3051	6	1	5	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0005	3051	5	1	0	0	2	2	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/1	t0006	3050	4	0	1	0	1	1	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0007	3051	3	2	1	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0008	3050	2	2	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0009	3050	1	0	1	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742