JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCF2L_chr13_112964214_113104742	0/0	t0010	3051	1	0	1	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0011	3051	1	0	1	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0012	3051	1	0	0	1	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	1/0	t0013	3050	1	0	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0014	3050	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0015	3051	1	0	0	0	0	1	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0016	3051	1	0	0	0	0	1	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0017	3051	1	0	0	0	0	1	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0018	3050	1	0	0	1	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0019	3050	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0020	3050	1	0	0	1	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0021	3050	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0022	3051	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0023	3051	1	0	1	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0024	3051	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0025	3051	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0026	3051	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0027	3051	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0028	3050	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0029	3050	1	0	1	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0030	3050	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0031	3051	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	t0032	3050	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2_chrX_139576770_139713167	1/1	t0001	808	237	65	44	97	7	22	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	t0002	808	5	0	0	5	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	t0003	808	3	3	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	t0004	808	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	t0005	808	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	t0006	808	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	t0007	808	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCFD2_chr2_46896874_46920806	0/0	t0001	3680	88	40	14	19	3	12	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0002	3680	70	3	9	40	5	13	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	1/1	t0003	3680	65	1	18	30	4	10	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0004	3680	64	1	6	51	1	5	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0005	3657	50	13	5	28	0	4	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0006	3680	13	11	1	0	0	1	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0007	3680	8	2	6	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0008	3680	5	2	3	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0009	3680	5	0	3	0	2	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0010	3704	4	3	1	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0011	3680	4	1	1	0	1	1	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0012	3657	4	4	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0013	3680	3	0	3	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0014	3704	3	3	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0015	3680	3	0	2	0	1	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0016	3657	2	2	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0017	3680	2	0	0	2	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0018	3680	2	2	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0019	3680	2	0	0	2	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0020	3680	1	0	0	1	0	0	copy fasta	MCFD2	chr2	46896874	46920806