Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARFGEF3_chr6_138156939_138349663	0/0	t0044	8326	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0045	8326	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0046	8325	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0047	8313	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0048	8325	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0049	8313	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0050	8314	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0051	8326	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0052	8326	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0053	8325	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0054	8326	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0055	8326	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0056	8316	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0057	8330	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	t0058	8326	1	0	0	0	0	1	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFIP1_chr4_152774954_152917357	0/0	t0001	2421	110	16	16	62	4	12	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0002	2421	109	41	14	39	1	14	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/1	t0003	2421	91	17	14	44	4	11	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0004	2421	9	8	1	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0005	2421	4	0	0	4	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0006	2421	3	0	0	3	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0007	2421	2	2	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0008	2421	2	2	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0009	2421	2	0	0	2	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0010	2421	2	1	0	0	1	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0011	2421	1	1	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0012	2421	1	1	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0013	2421	1	0	0	1	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0014	2421	1	1	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	1/0	t0015	2421	1	0	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0016	2421	1	0	1	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0017	2421	1	0	0	0	0	1	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	t0018	2421	1	0	0	1	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP2_chr11_6471519_6486331	1/1	t0001	738	383	76	79	165	17	44	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	t0002	738	9	9	0	0	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	t0003	738	2	2	0	0	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	t0004	738	2	2	0	0	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	t0005	738	2	1	1	0	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	t0006	738	1	0	0	0	0	1	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	t0007	738	1	0	0	1	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	t0008	738	1	0	0	0	1	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	t0009	738	1	0	0	0	0	1	copy fasta	ARFIP2	chr11	6471519	6486331
ARFRP1_chr20_63693647_63712976	0/0	t0001	1913	168	51	37	48	7	25	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0002	1905	87	1	7	70	2	7	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	1/1	t0003	1913	8	0	3	0	1	2	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0004	1912	6	6	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0005	1913	4	4	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0006	1912	3	2	1	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0007	1913	3	3	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0008	1913	2	2	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976