JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCFD2_chr2_46896874_46920806	0/0	t0021	3680	1	0	0	1	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0022	3680	1	0	1	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0023	3680	1	0	0	0	1	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0024	3680	1	1	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0025	3680	1	1	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0026	3680	1	0	0	1	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0027	3657	1	1	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0028	3657	1	1	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0029	3657	1	0	0	1	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0030	3657	1	0	0	1	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0031	3657	1	0	0	1	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0032	3680	1	1	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0033	3680	1	0	1	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	t0034	3680	1	1	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCHR1_chr22_40674484_40687812	0/0	t0001	1054	198	23	25	121	10	19	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	1/0	t0002	1054	67	17	28	2	2	17	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0003	1054	54	15	9	26	3	1	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/1	t0004	1054	37	27	6	0	1	2	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0005	1054	9	1	2	0	0	6	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0006	1054	6	1	2	0	1	2	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0007	1054	6	0	0	6	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0008	1054	4	1	1	0	0	2	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0009	1054	4	4	0	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0010	1054	4	0	0	4	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0011	1054	3	2	1	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0012	1054	2	0	0	2	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0013	1054	2	2	0	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0014	1054	1	0	0	0	1	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0015	1054	1	0	0	0	0	1	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0016	1054	1	1	0	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0017	1054	1	0	0	1	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0018	1054	1	0	1	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0019	1054	1	0	0	1	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0020	1054	1	0	1	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0021	1054	1	0	0	1	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0022	1054	1	1	0	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	t0023	1054	1	1	0	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR2_chr6_99913519_99999223	0/0	t0001	2737	118	22	14	67	3	12	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0002	2738	61	8	19	25	2	7	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0003	2737	29	14	9	0	4	2	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0004	2738	19	5	5	3	3	3	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0005	2737	13	10	3	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0006	2736	10	3	2	0	1	4	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0007	2737	9	6	2	0	1	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0008	2737	9	1	5	1	0	2	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0009	2737	7	7	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	1/0	t0010	2737	5	4	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0011	2737	4	3	1	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0012	2737	3	3	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0013	2738	3	0	0	3	0	0	copy fasta	MCHR2	chr6	99913519	99999223