JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCHR2_chr6_99913519_99999223	0/1	t0014	2737	3	0	2	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0015	2737	2	2	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0016	2736	2	0	2	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0017	2737	2	0	1	0	0	1	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0018	2737	2	0	0	2	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0019	2737	1	0	0	1	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0020	2738	1	0	1	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0021	2737	1	0	1	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0022	2738	1	0	0	0	0	1	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0023	2737	1	1	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0024	2737	1	1	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0025	2737	1	0	1	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0026	2737	1	0	0	0	0	1	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0027	2737	1	0	0	1	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0028	2737	1	1	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0029	2737	1	1	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0030	2737	1	0	0	0	0	1	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0031	2737	1	0	0	0	0	1	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0032	2737	1	0	0	1	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	t0033	2737	1	0	0	0	0	1	copy fasta	MCHR2	chr6	99913519	99999223
MCIDAS_chr5_55214564_55232315	0/0	t0001	980	218	44	53	85	9	27	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	1/1	t0002	980	73	14	8	32	5	12	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0003	980	58	15	5	37	0	1	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0004	980	12	0	0	11	0	1	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0005	980	11	8	3	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0006	976	7	5	0	1	0	1	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0007	980	3	2	1	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0008	980	1	1	0	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0009	980	1	1	0	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0010	980	1	0	1	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	t0011	980	1	0	1	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCL1_chr1_150569558_150584610	0/0	t0001	2902	188	51	34	76	8	19	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/1	t0002	2902	128	9	21	70	5	22	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0003	2894	18	0	0	18	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0004	2902	17	1	7	1	2	6	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0005	2902	12	0	0	12	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	1/0	t0006	2898	10	9	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0007	2908	5	5	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0008	2902	4	4	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0009	2902	4	1	1	0	2	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0010	2902	4	4	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0011	2894	3	3	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0012	2902	3	2	1	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0013	2902	3	0	2	0	1	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0014	2902	2	0	0	2	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0015	2898	2	2	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0016	2908	1	0	1	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0017	2902	1	1	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0018	2902	1	0	0	1	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0019	2902	1	1	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610