JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCL1_chr1_150569558_150584610	0/0	t0020	2902	1	0	1	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0021	2902	1	1	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0022	2902	1	1	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0023	2902	1	0	0	0	0	1	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	t0024	2898	1	1	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCM10_chr10_13156558_13216110	1/0	t0001	1925	159	30	27	82	3	16	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/1	t0002	1927	74	3	18	38	1	13	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0003	1926	67	15	11	20	9	12	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0004	1927	38	13	9	12	0	4	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0005	1928	26	1	12	9	2	2	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0006	1927	19	7	0	11	0	1	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0007	1927	15	14	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0008	1925	5	0	0	5	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0009	1928	4	0	2	0	2	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0010	1925	3	1	1	0	1	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0011	1926	2	2	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0012	1925	2	0	0	2	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0013	1926	2	0	0	2	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0014	1927	2	1	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0015	1925	2	2	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0016	1925	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0017	1926	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0018	1926	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0019	1926	1	0	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0020	1927	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0021	1927	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0022	1927	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0023	1925	1	0	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0024	1926	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0025	1926	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0026	1927	1	0	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	t0027	1927	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM2_chr3_127593411_127627436	1/1	t0001	720	422	97	78	181	18	46	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	t0002	720	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	t0003	720	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	t0004	720	1	1	0	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	t0005	733	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM3AP_chr21_46230133_46290611	1/1	t0001	461	244	68	42	94	10	28	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	t0002	461	116	26	28	42	6	14	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3_chr6_52259015_52289742	1/1	t0001	642	394	76	65	205	10	36	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	t0002	643	17	5	3	5	0	4	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	t0003	642	12	11	1	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	t0004	642	3	0	0	0	2	1	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	t0005	642	1	0	0	0	0	1	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	t0006	642	1	0	1	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	t0007	642	1	0	0	1	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	t0008	642	1	0	0	1	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM4_chr8_47955941_47983160	0/0	t0001	1470	154	34	31	65	5	19	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0002	1469	42	20	3	11	0	8	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	1/1	t0003	1471	35	6	3	15	4	5	copy fasta	MCM4	chr8	47955941	47983160