JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCM4_chr8_47955941_47983160	0/0	t0004	1468	25	0	10	12	0	3	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0005	1469	6	5	1	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0006	1472	6	5	1	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0007	1471	6	6	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0008	1470	6	0	0	6	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0009	1468	5	5	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0010	1469	5	0	0	5	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0011	1470	4	4	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0012	1468	3	0	2	0	0	1	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0013	1470	2	0	0	0	0	2	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0014	1470	2	1	0	0	0	1	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0015	1469	2	1	0	0	0	1	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0016	1468	2	2	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0017	1469	2	2	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0018	1469	1	0	0	0	1	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0019	1471	1	0	1	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0020	1470	1	0	0	0	1	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0021	1469	1	0	0	0	1	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0022	1470	1	0	0	1	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0023	1469	1	1	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	t0024	1471	1	0	0	1	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM5_chr22_35395140_35430431	1/0	t0001	1254	283	32	62	135	16	37	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0002	1254	43	1	8	32	0	2	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/1	t0003	1254	29	8	3	11	2	4	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0004	1254	25	24	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0005	1254	12	6	3	2	0	1	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0006	1254	4	4	0	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0007	1254	1	0	0	0	0	1	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0008	1254	1	1	0	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0009	1254	1	0	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0010	1254	1	1	0	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0011	1254	1	1	0	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0012	1254	1	0	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0013	1254	1	0	0	0	0	1	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	t0014	1254	1	0	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM6_chr2_135834626_135881443	1/0	t0001	1288	126	15	26	62	5	17	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/1	t0002	1287	99	14	19	53	0	12	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0003	1286	71	10	18	34	3	6	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0004	1289	22	0	2	20	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0005	1288	16	2	4	8	0	2	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0006	1289	16	15	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0007	1289	10	10	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0008	1286	6	4	1	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0009	1290	4	4	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0010	1290	3	3	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0011	1289	2	2	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0012	1290	2	2	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0013	1290	2	2	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0014	1290	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0015	1288	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443