JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCM6_chr2_135834626_135881443	0/0	t0016	1288	1	0	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0017	1289	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0018	1289	1	0	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0019	1290	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0020	1286	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0021	1288	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0022	1289	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0023	1287	1	0	0	0	0	1	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0024	1288	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0025	1287	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0026	1286	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0027	1286	1	0	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	t0028	1288	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM7_chr7_100087728_100106397	1/1	t0001	308	419	93	74	183	18	49	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	t0002	308	1	1	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	t0003	308	1	0	0	1	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	t0004	308	1	0	0	0	0	1	copy fasta	MCM7	chr7	100087728	100106397
MCM8_chr20_5945652_6003977	0/0	t0001	4965	36	0	3	30	1	2	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/1	t0002	4967	27	5	7	9	1	4	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0003	4950	17	0	0	17	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	1/0	t0004	4964	14	4	6	0	2	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0005	4971	9	3	2	4	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0006	4969	9	3	0	5	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0007	4950	9	0	0	9	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0008	4967	8	6	0	1	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0009	4962	8	0	6	0	1	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0010	4969	7	0	0	3	0	4	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0011	4964	6	1	0	3	0	2	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0012	4962	6	0	1	4	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0013	4966	5	0	2	0	1	2	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0014	4961	5	5	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0015	4968	4	2	0	1	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0016	4971	4	0	3	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0017	4973	4	1	0	2	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0018	4969	4	0	2	0	2	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0019	4968	4	2	1	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0020	4963	4	2	0	2	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0021	4952	4	0	0	4	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0022	4973	3	0	0	2	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0023	4963	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0024	4955	3	0	0	0	0	3	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0025	4971	3	1	1	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0026	4971	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0027	4967	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0028	4965	3	0	0	3	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0029	4964	3	0	0	3	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0030	4962	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0031	4962	3	2	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0032	4962	3	1	2	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0033	4961	3	0	0	3	0	0	copy fasta	MCM8	chr20	5945652	6003977