JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCM8_chr20_5945652_6003977	0/0	t0084	4946	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0085	4971	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0086	4970	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0087	4971	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0088	4970	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0089	4971	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0090	4967	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0091	4969	1	0	0	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0092	4967	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0093	4969	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0094	4966	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0095	4968	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0096	4968	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0097	4969	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0098	4967	1	0	0	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0099	4967	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0100	4967	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0101	4968	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0102	4965	1	0	0	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0103	4967	1	0	0	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0104	4967	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0105	4965	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0106	4965	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0107	4965	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0108	4965	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0109	4965	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0110	4966	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0111	4965	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0112	4964	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0113	4964	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0114	4966	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0115	4965	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0116	4965	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0117	4964	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0118	4960	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0119	4963	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0120	4962	1	0	0	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0121	4965	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0122	4965	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0123	4963	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0124	4964	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0125	4962	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0126	4962	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0127	4961	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0128	4961	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0129	4960	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0130	4960	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0131	4960	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0132	4959	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0133	4961	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977