JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCM8_chr20_5945652_6003977	0/0	t0134	4962	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0135	4961	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0136	4950	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0137	4950	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0138	4954	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0139	4949	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0140	4950	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0141	4954	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0142	4951	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0143	4962	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0144	4968	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	t0145	4966	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM9_chr6_118808455_118940159	0/0	t0001	1788	141	19	19	76	10	17	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0002	1788	82	33	22	17	3	7	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0003	1787	51	9	4	36	0	2	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/1	t0004	1788	39	8	20	0	5	5	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0005	1787	6	0	2	2	0	2	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0006	1788	4	4	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0007	1787	4	4	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0008	1787	4	3	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0009	1787	3	3	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	1/0	t0010	1788	2	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0011	1788	2	2	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0012	1787	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0013	1788	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0014	1788	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0015	1787	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0016	1787	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0017	1788	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0018	1788	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0019	1787	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0020	1788	1	0	0	0	0	1	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	t0021	1788	1	0	1	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCMBP_chr10_119824440_119877843	0/1	t0001	2294	183	46	34	88	6	8	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	1/0	t0002	2294	94	26	14	36	4	13	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0003	2296	39	0	0	31	0	8	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0004	2293	24	6	10	0	1	7	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0005	2294	9	1	8	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0006	2294	8	0	6	1	0	1	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0007	2298	7	7	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0008	2294	6	0	0	6	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0009	2296	5	0	2	0	2	1	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0010	2294	5	5	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0011	2298	3	0	1	0	2	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0012	2294	2	2	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0013	2294	2	2	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0014	2293	1	0	0	0	0	1	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0015	2293	1	0	0	0	0	1	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0016	2296	1	0	0	0	0	1	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0017	2320	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843