JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCMBP_chr10_119824440_119877843	0/0	t0018	2296	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0019	2296	1	0	0	0	0	1	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0020	2294	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0021	2298	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0022	2294	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0023	2294	1	1	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0024	2294	1	0	1	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0025	2293	1	0	0	0	1	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	t0026	2294	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMDC2_chr8_66865771_66927048	1/1	t0001	3029	120	24	37	34	10	13	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0002	3029	38	22	5	1	0	10	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0003	3029	9	7	2	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0004	3029	8	8	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0005	3029	8	0	0	8	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0006	3029	5	5	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0007	3029	2	2	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0008	3029	2	2	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0009	3029	1	1	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0010	3029	1	1	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0011	3029	1	0	0	1	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0012	3029	1	0	0	1	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0013	3029	1	0	0	0	0	1	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0014	3029	1	0	0	1	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0015	3029	1	1	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0016	3029	1	0	0	1	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0017	3029	1	1	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	t0018	3029	1	0	0	1	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCOLN1_chr19_7517624_7539009	1/1	t0001	342	413	94	82	173	18	44	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	t0002	342	1	0	0	1	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN2_chr1_84920583_85002113	0/0	t0001	1344	88	38	12	28	3	7	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0002	1344	73	12	17	31	4	9	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0003	1344	51	0	20	23	2	6	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0004	1344	25	4	6	14	0	1	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0005	1344	18	18	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0006	1345	16	0	0	16	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0007	1345	14	0	1	8	0	5	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0008	1343	10	0	1	8	0	1	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0009	1343	9	0	2	7	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/1	t0010	1346	5	0	0	4	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0011	1344	5	0	4	0	1	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0012	1343	4	0	0	1	0	3	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0013	1344	3	2	0	0	0	1	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0014	1345	3	3	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0015	1346	3	0	1	2	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0016	1345	2	0	0	1	1	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0017	1344	2	0	1	0	1	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0018	1344	2	1	0	0	0	1	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0019	1345	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	1/0	t0020	1344	1	0	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0021	1345	1	0	1	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113